Opened 10 years ago

Closed 10 years ago

Last modified 9 years ago

#767 closed defect (duplicate)

ports V5 and SuiteSparse installation on Ubuntu 12.04.5 LTS

Reported by: Nakul Aggarwal Owned by:
Priority: major Milestone:
Component: booking Keywords: I3Port
Cc:

Description

Dear Don (or To Whom it may concern),

Alex suggested me to contact you via the IceCube? ticket, so I'm writing this to ask you some helps. I have been struggling to build SuiteSparse? under I3Port version 5 for a week and still cannot do it. My platform is Ubuntu 12.04.5 LTS.
The ports I have installed
are:

cfitsio_3.27 3.27_2 (active)

anis_1.8.2 1.8.2_3 (active)
sprng_2.0a 2.0a_8 (active)
cmake 2.8.5_5 (active)
hdf5_1.8.13 1.8.13_0 (active)
rdmc_2.9.5 2.9.5_5 (active)
log4cplus_1.0.4 1.0.4_4 (active)
root_5.34.18 5.34.18_1 (active)
photonics_1.73 1.73_6 (active)
anis_1.0 1.0_1 (active)
gsl_1.14 1.14_1 (active)
mysql_4.1.20 4.1.20_3 (active)
cdk 5.0_2 (active)
gmp_4.3.2 4.3.2_3+test (active)
gsl_1.16 1.16_0 (active)
cmake_2.8.5 2.8.5_6 (active)
boost_1.38.0 1.38.0_20 (active)
slalib-c_0.0 0.0_8 (active)

Although I did run apt-get to grab libblas-dev, libopenblas-dev, and libopenblas-base,
the port configuration procedure cannot catch them, and I tried to install
GotoBLAS2 with the port command ./bin/port -vd clean GotoBLAS2.
Then I got the following error messages:

######################################################
gfortran -O2 -m128bit-long-double -Wall -o zblat3 zblat3.o ../libgoto2-r1.13.a -lm -lm
GOTO_NUM_THREADS=1 ./sblat1

Real BLAS Test Program Results

Test of subprogram number 1 SDOT

----- PASS -----

....
Test of subprogram number 10 ICAMAX

----- PASS -----

GOTO_NUM_THREADS=1 ./zblat1

Complex BLAS Test Program Results

Test of subprogram number 1 ZDOTC

Segmentation fault (core dumped)
make[1]: * [level1] Error 139
make[1]:
* Waiting for unfinished jobs....
make[1]: Leaving directory `/usr/local/iceCube/i3ports_v5/var/db/dports/build/file._usr_local_iceCube_i3ports_v5_var_db_dports_sources_rsync.code.icecube.wisc.edu_icecube-tools-ports_devel_gotoblas2/work/GotoBLAS2/test'
make: * [tests] Error 2
Error: Target com.apple.build returned: shell command "make DYNAMIC_ARCH=1 USE_THREAD=0 all" returned error 2
##################################################

Can you please give me suggestions what I should try to resolve the problem?
Even when I skipped the GotoBLAS2 installation and directly jumped into
installing SuiteSparse? by "./bin/port -vd install SuiteSparse?", I got the same error messages.

Change History (2)

comment:1 Changed 10 years ago by David Schultz

  • Resolution set to duplicate
  • Status changed from new to closed

duplicate of #768, and since this was created anonymously and the other wasn't, we'll close this one.

comment:2 Changed 9 years ago by Alex Olivas

  • Milestone "Happy Time!" version of offline-software deleted

Milestone "Happy Time!" version of offline-software deleted

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